Journal publications

posted Jun 25, 2012, 10:59 AM by Gokul Upadhyayula   [ updated Mar 18, 2017, 9:50 AM by Val Vullev ]
RSC Larsen-Clinton, J. M.; Espinoza, E. M.; Mayther, M.; Clark, J.; Tao, C.; Bao, D.; Larino, C. M.; Wurch, M.; Lara, S.; Vullev, V. I. "Fluorinated Aminoanthranilamides: Non-native Amino Acids for Bringing Proteomic Approaches to Charge-Transfer SystemsPhys. Chem. Chem. Phys. 201719, 78717876DOI: 10.1039/C7CP00432J

RSC Xia, P.; Huang, Z.; Li, X.; Romero, J. J.; Vullev, V. I.; Pau, G. S. H.; Tang, M. L. "On the Efficacy of Anthracene Isomers for Triplet Transmission from CdSe NanocrystalsChemComm 2017, 53, 12411244DOI: 10.1039/C6CC08229G

ACS Purc, A.; Espinoza, E. M.; Nazir, R.; Romero, J. J.; Skonieczny, K.; Jeżewski, A.; Larsen, J. M.; Gryko, D. T.; Vullev, V. I. "Gating that Suppresses Charge Recombination – the Role of Mono-N-Arylated Diketopyrrolopyrrole" J. Am. Chem. Soc. 2016138, 12826–12832DOI: 10.1021/jacs.6b04974

 Wiley Krzeszewski, M.; Kodama, T.; Espinoza, E. M.; Vullev, V. I.; Kubo, T.; Gryko, D. T. "Non-Planar Butterfly-Shaped π-Expanded Pyrrolopyrroles" Chem. Eur. J. 201622, 16478–16488DOI: 10.1002/chem.201603282

Wiley Skonieczny, K.; Jaeduk Yoo, J.; Larsen, J. M.; Espinoza, E. M.; Barbasiewicz, M.; Vullev, V. I.; Lee, C.-H.; Gryko, D. T. "How To Reach Intense Luminescence for Compounds Capable of Excited-State Intramolecular Proton Transfer?" Chem. Eur. J. 2016, 227485–7496. DOI: 10.1002/chem.2015049 44

BMOE Mac, J. T.; Nuñez, V.; Burns, J. M.; Guerrero, Y. A.; Vullev, V. I.; Anvari, B. "Erythrocyte-Derived Nano-Probes Functionalized with Antibodies for Targeted Near Infrared Fluorescence Imaging of Cancer Cells" Biomedical Optics Express 2016713111322. DOI: 10.1364/BOE.7.001311

ACS JPCL Espinoza, E. M.; Larsen, J. M.; Vullev, V. I. "What Makes Oxidized N-Acylanthranilamides Stable?" J. Phys. Chem. Lett. 2016, 7758–764DOI: 10.1021/acs.jpclett.5b02881

Wiley Online Library Espinoza, E. M.; Xia, B.; Darabedian, N.; Larsen, J. M.; Nuñez, V.; Bao, D.; Mac, J. T.; Botero, F.; Wurch, M.; Zhou, F.; Vullev, V. I. "Nitropyrene Photoprobes: Making Them, and What Are They Good for?" Eur. J. Org. Chem. 2016343–356DOI: 10.1002/ejoc.201501339

Wiley Online Library Gorham, R. D.; Nunez, V.; Lin, J.-H.; Rooijakkers, S. H. M.; Vullev, V. I.; Morikis, D. "Discovery of Small Molecules for Fluorescent Detection of Complement Activation Product C3d" J. Med. Chem. 201558, 9535–9545. DOI: 10.1021/acs.jmedchem.5b01062

ESCS Nuñez, V.; Vullev, V. I. "Chemical Aspects of Biocompatible Interfaces," Encyclopedia of Surface and Colloid Science, Third Edition 2015, pp. 1-22.

Nanotechnology Guerrero, Y. A.; Bahmani; B.; Singh, S. P.; Vullev, V. I.; Kundra, V.; Anvari, B. "Virus-Resembling Nano-Structures for Near Infrared Fluorescence Imaging of Ovarian Cancer HER2 Receptors," Nanotechnology 2015
26435102 (11pp)DOI: 10.1088/0957-4484/26/43/435102

Pure Appl. Chem. Larsen, J. M.; Espinoza, E. M.; Hartman, J. D.; Lin, C-K.; Wurch, M.; Maheshwari, P.; Kaushal, R. K.; Marsella, M. J.; Beran, G. J. O.; Vullev, V. I. "Building Blocks for Bioinspired Electrets: Molecular-Level Approach to Materials for Energy and Electronics," Pure Appl. Chem. 2015, 87779792DOI: 10.1515/pac-2015-0109

http://pubs.acs.org/doi/abs/10.1021/ja505618n Upadhyayula, S.; Nuñez, V.; Espinoza, E. M.; Larsen, J. M.; Bao, D.; Shi, D.; Mac, J.; Anvari, B.; Vullev, V. I. "Photoinduced Dynamics of a Cyanine Dye: Parallel Pathways of Non-radiative Deactivation Involving Multiple Excited-State Twisted Transients," Chem. Sci. 20156, 2237–2251DOI: 10.1039/C4SC02881C

http://photonicsforenergy.spiedigitallibrary.org/article.aspx?articleid=2295564 Larsen, J. M.; Espinoza, E. M.; Vullev, V. I. "Bioinspired Molecular Electrets: Bottom-up Approach to Energy Materials and Applications," J. Photon. Energy. 2015, 5(1), 055598. DOI:10.1117/1.JPE.5.055598

http://pubs.acs.org/doi/abs/10.1021/ja505618n Bao, D.; Upadhyayula, S.; Larsen, J. M.; Xia, B.; Georgieva, B.; Nuñez, V.; Espinoza, E. M.; Hartman, J. D.; Wurch, M.; Chang, A.; Lin, C.-K.; Larkin, J.; Vasquez, K.; Beran, G. J. O.; Vullev, V. I. "Dipole-Mediated Rectification of Intramolecular Photoinduced Charge Separation and Charge Recombination," J. Am. Chem. Soc. 2014136, 12966–12973DOI: 10.1021/ja505618n

http://onlinelibrary.wiley.com/doi/10.1002/lsm.22269/abstract;jsessionid=79B227F7D7A3E24253214368379514F1.f03t04 Bahmani, B.; Guerrero, Y.; Bacon, D.; Kundra, V.; Vullev, V. I.; Anvari, B. "Functionalized Polymeric Nanoparticles Loaded with Indocyanine Green as Theranostic Materials for Targeted Molecular Near Infrared Fluorescence Imaging and Photothermal Destruction of Ovarian Cancer Cells," Lasers in Surgery and Medicine 2014, 46, 582-592. DOI: 10.1002/lsm.22269

 Lock, J. Y.; Wyatt, E.; Upadhyayula, S.; Whall, A.; Nuñez, V.; Vullev, V.; Liu, H. “Degradation and Antimicrobial Properties of Magnesium Alloys in Artificial Urine for Potential Resorbable Ureteral Stent Applications,” J. Biomed. Mater. Res., Part A 2014, 102 (3), 781-792. DOI: 10.1002/jbm.a.34741

http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6579625 Jung, B.; Vullev, V. I.; Anvari, B. "Revisiting Indocyanine Green: Effects of Serum and Physiological Temperature on Absorption and Fluorescence Characteristics," IEEE Journal of Selected Topics in Quantum Electronics, 2014, 20, 7000409/1-7000409/9. DOI: 10.1109/JSTQE.2013.2278674.

Nuñez, V.; Upadhyayula, S.; Millare, B.; Hadian, Ali.; Shin, S.; Vandrangi, P.; Gupta, S.; Xu, H.; Lin, A.; Larsen, J.; Georgiev, G. Y.; Vullev, V. I. “Microfluidic space-domain time-resolved emission spectroscopy of terbium (III) and europium (III) chelates with pyridine-2,6-dicarboxylate,” Analytical Chemistry 2013, 85, 4567-4577. DOI: 10.1021/ac400200x.

Guo, S.; Bao, D.; Upadhyayula, S.; Wang, W.; Guvenc, A. B.; Kyle, J. R.; Bay, H.; Bozhilov, K.;Vullev, V.; Ozkan, C.; Ozkan, M. “Photoinduced Electron Transfer between Pyridine-Coated Cadmium Selenide Quantum Dots and Single-Sheet Graphene,” Adv. Funct. Mat. 2013, 23 (41), 5199-5211. 
DOI: 10.1002/adfm.201203652

Bahmani, B.; Lytle, C.; Walker, A.; Gupta, S.; Vullev, V.; Anvari, B. “Effects of nanoencapsulation and PEGylation on biodistribution of indocyanine green in healthy mice: quantitative fluorescence imaging and analysis of organs” Int. J. Nanomed., 2013, 8, 1609-1620. DOI: 10.2147/IJN.S42511

Gupta, S.; Chatni, M. R.; Rao, A. L. N.; Vullev, V. I.; Wang, L. V.; Anvari, B. “Virus-Mimicking Nano-constructs as a Contrast Agent for Near Infrared Photoacoustic Imaging,” Nanoscale, 2013, 5 (5), 1772-1776. DOI: 10.1039/c3nr34124k

Xia, B.; Bao, D.; Upadhyayula, S.; Jones II, G.; Vullev, V., "Anthranilamides as Bioinspired Molecular Electres: Experimental Evidence for a Permanent Ground-State Electric Dipole Moment," J. Org. Chem. 2013, 78 (5), 1994-2004. DOI: 10.1021/jo301942g

Wang, W.; Guo, S.; Penchev, M.; Zhong, J.; Lin, J.; Bao, D.; Vullev, V.; Ozkan, M.; Ozkan, C. S., "Hybrid Low Resistance Ultracapacitor Electrodes Based on 1-Pyrenebutyric Acid Functionalized Centimeter-Scale Graphene Sheets," J. Nanosci. Nanotechnol. 2012, 12 (9), 6913-6920. DOI: 10.1166/jnn.2012.6507

Lin, J.; Zhong, J.; Bao, D.; Reiber-Kyle, J.; Wang, W.; Vullev, V.; Ozkan, M.; Ozkan, C. S. "Supercapacitors based on pillared graphene nanostructures," J. Nanosci. Nanotechnol. 201212, 1770-1775. DOI: http://dx.doi.org/10.1166/jnn.2012.5198

Ghazinejad, M.; Kyle, J. R.; Guo, S.; Guvenc, A.; Pleskot, D.; Bao, D.; Vullev, V. I.; Ozkan, M.; Ozkan, C. S. "Non-invasive High-throughput Metrology of Functionalized Graphene Sheets," Adv. Funct. Mater. 201222 (21), 4519-4525. DOI: 10.1002/adfm.201200434

Upadhyayula, S.; Quinata, T.; Bishop, S.; Gupta, S.; Jonson, N.; Bahmani, B.; Bozhilov, K.; Stubbs, J.; Jreij, P.; Nallagatla, P.; Vullev, V. "Coatings of Polyethylene Glycol for Suppressing Non-specific Adhesion between Solid Microspheres and Flat Surfaces," Langmuir 2012; 28 (11) 5059-5069; doi: 10.1021/la300545v

Upadhyayula, S; Bao, D; Millare, B; Sylvia, S; Habib, K. M. M; Ashraf, M; Ferreira, A; Bishop, S; Bonderer, R; Baqai, S; Jing, X; Penchev, M; Ozkan, M; Ozkan, C; Lake, R; Vullev, V. "Permanent Electric Dipole Moments of Carboxyamides in Condensed Media: What Are the Limitations of Theory and Experiment?,"J. Phys. Chem. B 2011, 115 (30), 9473-9490.

Xia, B., Upadhyayula, S., Nunez, V., Landsman, Pavel., Lam, S., Malik, H., Gupta, S., Sarshar, M., Hu, J., Anvari, B., Jones, G., Vullev, V. "Amyloid Histology Stain for Rapid Bacterial Endospore Imaging," Journal of Clinical Microbiology 201149 (8), 2966-2975.

Bahmani, B., Gupta, S., Upadhyayula, S., Vullev, V. I., Anvari, B. "Effect of Polyethylene Glycol Coatings on Uptake of Indocyanine Green Loaded Nanocapsules by Human Spleen Macrophages In-Vitro," Journal of Biomedcial Optics 201116 (5), 051303.

Vullev, V. I. "From Biomimesis to Bioinspiration: What's the Benefit for Solar-Energy-Conversion Applications?" J. Phys. Chem. Lett. 2011, 2 (5), 503-508.

Chau, K.; Millare, B.; Lin, A.; Upadhyayula, S.; Nuñez, V.; Xu, H. and Vullev, V. I. "Dependence of the Quality of Adhesion between Poly(dimethylsiloxane) and Glass Surfaces on the Composition of the Oxidizing Plasma," Microfluidics and Nanofluidics 2011, 10 (4), 907-917. 

Bao, D.; Ramu, S.; Contreras, A.; Upadhyayula, S.; Vasquez, J.M.; Beran, G. and Vullev, V. I. "Electrochemical Reduction of Quinones: Interfacing Experiment and Theory for Defining Effective Radii of Redox Moieties," J. Phys. Chem. B 2010, 114, 14467-14479. 

Thomas, M. S.; Nunez, V.; Upadhyayula, S.; Zielins, E.; Bao, D.; Vasquez, J.M.; Bahmani, B. and Vullev, V. I. "Kinetics of Bacterial Fluorescence Staining with 3,3'-Diethylthiacyanine," Langmuir 2010, 26 (12), 9756-9765. 

Thomas, M. S.; Millare, B.; Clift, J. M.; Bao, D.; Hong, C. and Vullev, V. I. "Print-and-Peel Fabrication for Microfluidics: What’s in for Biomedical Applications?," Ann. Biomed. Eng. 2010, 38, 21-32.

Thomas, M. S.; Clift, J. M.; Millare, B.; and Vullev, V. I. "Print-and-Peel Fabricated Passive Micromixers," Langmuir. 2010, 26 (4), 2951-2957. 

Lu, H.; Bao, D.; Penchev, M.; Ghazinejab, M.; Vullev, V. I.; Ozkan, C.; Ozkan, M. "Pyridine-Coated Lead Sulfide Quantum Dots for Polymer Hybrid Photovoltaic Devices," Adv. Sci. Lett.2010, 3, 101-109. doi:10.1166/asl.2010.1110 

Wan, Jiandi; Thomas, Marlon; Guthrie, Sean; Vullev, Valentine I. "Surface-Bound Proteins with Preserved Functionality," Ann. Biomed. Eng. 2009, 37, 1190–1205.

Hu, Jingqiu; Xia, Bing; Bao, Duoduo; Ferreira, Amy; Wan, Jiandi; Jones, Guilford and Vullev, Valentine I. "Long-Lived Photogenerated States of a-Oligothiophene-Acridinium Dyads Have Triplet Character," J. Phys. Chem. A 2009113, 3096–3107. 

Bao, Duoduo; Millare, Brent; Xia, Wei; Steyer, Benjamin; Gerasimenko, Alexander; Ferreira, Amy; Contreras, Antonio; Vullev, Valentine "Electrochemical Oxidation of Ferrocene: A Strong Dependence on the Concentration of the Supporting Electrolyte for Nonpolar Solvents", J. Phys. Chem. A 2009113, 1259-1267.

Vasquez, Jacob M; Vu, Andrew; Schultz, Jerome; Vullev, Valentine "Fluorescence Enhancement of Warfarin Induced by Interaction with B-Cyclodextrin", Biotechnology Progress 2009, 25 (4), 906-914.

Ashraf, M. K.; Millare, Brent; Gerasimenko, Alexander A.; Bao, Duoduo; Pandey, Rajeev R.; Lake, Roger K.; Vullev, Valentine "Theoretical design of bioinspired macromolecular electrets based on anthranilamide derivatives.", Biotechnology Progress 2009, 25 (5), 915-922.

Millare, Brent; Thomas, Marlon; Ferreira, Amy; Xu, Hong; Holesinger, Madison; Vullev, Valentine "Dependence of the Quality of Adhesion between Poly(dimethylsiloxane) and Glass Surfaces on the Conditions of Treatment with Oxygen Plasma", Langmuir 200824, 13218-13224.

Hong, Connie; Bao,Duoduo; Thomas, Marlon; Clift, Joseph; Vullev, Valentine "Print-and-Peel Fabrication of Microelectrodes", Langmuir 200824 (16), 8439-8442.

Wan, J.; Ferreira, A.; Xia, W.; Chow, C. H.; Takechi, K.; Kamat, P. V.; Jones, G. II and Vullev, V. I. "Solvent Dependence of the Charge-Transfer Properties of a Quaterthiophene-Anthraquinone Dyad",J. Photochem. Biotobiol. A: Chemistry 2008197, 364-374.

Jones, G., II; Yan, D.; Hu, J.; Wan, J.; Xia, B.; and Vullev, V. I. "Photoinduced Electron Transfer in Arylacridinium Conjugates in a Solid Glass Matrix", J. Phys. Chem., B 2007111, 6921-6929.

Vullev, V. I.; Wan, J.; Heinrich, V.; Landsman, P.; Bower, P. E.; Xia, B.; Millare, B. and Jones, G., II "Nonlithographic Fabrication of Microfluidic Devices", J. Am. Chem. Soc. 2006128, 16062-16072.

Mayers, B. T.; Vezenov, D. V.; Vullev, V. I.; Whitesides, G. M. "Arrays and Cascades of Fluorescent Liquid-Liquid Waveguides: Broadband Light Sources for Spectroscopy in Microchannels", Anal. Chem.200577, 1310-1316.

Vullev, V. I.; Jiang, H.; and Jones II, G. "Excimer Sensing", In Advanced Concepts in Fluorescence Spectroscopy: Part B: Macromolecular Sensing (Topics in Fluorescence Spectroscopy, Vol. 10), Geddes, C. D. and Lakowicz, J. R. Eds.; Springer Science + Business Media, Inc.; 2005, P211-240.

Vullev, V. I. "Modulation of Dissociation Kinetics by External Force: Examination of the Bell Model", J. Biol. Sci. 20055, 744-758.

Vullev, V. I.; Jones, G., II "Nanosecond Laser Flash Photolysis: Dealing with Dynamic-Range and Response-Time Limitations of the Detection System", J. Appl. Sci. 20055, 517-526.

Jones, G., II; Zhou, X.; Vullev, V. I. (invited publication) "Photoinduced Electron Transfer in Alpha-Helical Polypeptides: Dependence on Conformation and Electron Donor-Acceptor Distance",Photochem. & Photobiol. Sci. 20032, 1080-1087.

Vullev, V. I.; Jones, G., II "Photoinduced Electron Transfer in Alkanoylpyrene Aggregates in Conjugated Polypeptides", Tet. Lett. 200243, 8611-8615.

Jones, G., II; Vullev, V. I. "Photoinduced Electron Transfer between Non-Native Donor-Acceptor Moieties Incorporated in Synthetic Polypeptide Aggregates", Org. Lett. 20024, 4001-4004.

Jones, G., II; Vullev, V. I. (cover of the issue) "Medium Effects on the Photophysical Properties of Terbium(III) Complexes with Pyridine-2,6-dicarboxylate", Photochem. & Photobiol. Sci. 20021, 925-933.

Jones, G., II; Vullev, V. I. "Medium Effects on the Stability of Terbium(III) Complexes with Pyridine-2,6-dicarboxylate", J. Phys. Chem. A 2002106, 8213-8222.

Vullev, V. I.; Jones, J., II (invited review) "Photoinduced Charge Transfer in Helical Polypeptides",Res. Chem. Interm. 200228, 795-815.

Jones, G., II; Vullev, V. I. "Contribution of a Pyrene Fluorescence Probe to the Aggregation Propensity of Polypeptides", Org. Lett. 20013, 2457-2460.

Jones, G., II; Vullev, V. I. "Ground- and Excited-State Aggregation Properties of a Pyrene Derivative in Aqueous Media", J. Phys. Chem. A 2001105, 6402-6406.

Jones, G., II; Vullev, V. I.; Braswell, E.; Zhu, D. "Multistep Photoinduced Electron Transfer in a de Novo Helix Bundle. Multimer Self-Assembly of Peptide Chains Including a Chromophore Special Pair",J. Am. Chem. Soc. 2000122, 388-389. 

Jones, G., II; Lu, L.; Vullev, V. I.; Gosztola, D.; Greenfield, S.; Wasielewski, M. "Photoinduced Electron Transfer for Pyrenesulfonamide Conjugates of Tryptophan-Containing Peptides. Mitigation of Fluoroprobe Behavior in N-Terminal Labeling Experiments", Bioorg. Med. Chem. Lett. 19955, 2385-2390.
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